Background | Presence of COVID-19 on the unit | Methods | pretest probability | Sensitivity | Posttest Probability | Unit-wide posttest Probability | Discussion | Limitations and Assumptions | Parameters | Model assumptions | Future Directions (and Contributing) | References
Package: covidprobability 0.1.0
covidprobability: Estimate the Unit-Wide Probability of COVID-19
We propose a method to estimate the probability of an undetected case of COVID-19 in a defined setting, when a given number of people have been exposed, with a given pretest probability of having COVID-19 as a result of that exposure. Since we are interested in undetected COVID-19, we assume no person has developed symptoms (which would warrant further investigation) and that everyone was tested on a given day, and all tested negative.
Authors:
covidprobability_0.1.0.tar.gz
covidprobability_0.1.0.zip(r-4.7-any)covidprobability_0.1.0.zip(r-4.6-any)covidprobability_0.1.0.zip(r-4.5-any)
covidprobability_0.1.0.tgz(r-4.6-any)covidprobability_0.1.0.tgz(r-4.5-any)
covidprobability_0.1.0.tar.gz(r-4.7-any)covidprobability_0.1.0.tar.gz(r-4.6-any)
covidprobability_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
covidprobability/json (API)
| # Install 'covidprobability' in R: |
| install.packages('covidprobability', repos = c('https://eebrown.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/eebrown/covidprobability/issues
Datasets:
- sens - COVID-19 PCR sensitivity by days since exposure
Last updated from:4d92ce05fa. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 119 | ||
| source / vignettes | OK | 139 | ||
| linux-release | OK | 117 | ||
| macos-release | OK | 162 | ||
| macos-oldrel | OK | 146 | ||
| windows-devel | OK | 70 | ||
| windows-release | OK | 61 | ||
| windows-oldrel | OK | 61 | ||
| wasm-release | OK | 108 |
Exports:adjust_pretestcalc_postest_probindividual_probabilityposttest_seriesprobability_anyprop_remainingunit_probability
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate pretest probability change over time | adjust_pretest |
| Calculate posttest probability from pretest probability and test characteristics | calc_postest_prob |
| Calculate a time series of probability for an individual following exposure | individual_probability |
| Calculate post-test probability if testing occurred on each day in a series | posttest_series |
| Find the probability of any (at least one) event happening | probability_any |
| The remaining individuals who would not be expected to show symptoms yet | prop_remaining |
| COVID-19 PCR sensitivity by days since exposure | sens |
| Calculate a time series of unit-wide probability following exposure | unit_probability |