{ "_id": "6a198116acfb0bcc41df8ef0", "Package": "covidprobability", "Title": "Estimate the Unit-Wide Probability of COVID-19", "Version": "0.1.0", "Authors@R": "c(person(given = \"Eric\",\nfamily = \"Brown\",\nrole = c(\"aut\", \"cre\"),\nemail = \"eb@ericebrown.com\",\ncomment = c(ORCID = \"0000-0002-1575-2606\")),\nperson(given = \"Wei\",\nfamily = \"Wang\",\nrole = c(\"ctb\"))\n)", "Description": "We propose a method to estimate the probability of an\nundetected case of COVID-19 in a defined setting, when a given\nnumber of people have been exposed, with a given pretest\nprobability of having COVID-19 as a result of that exposure.\nSince we are interested in undetected COVID-19, we assume no\nperson has developed symptoms (which would warrant further\ninvestigation) and that everyone was tested on a given day, and\nall tested negative.", "URL": "https://github.com/eebrown/covidprobability", "BugReports": "https://github.com/eebrown/covidprobability/issues", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.1.1", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Repository": "https://eebrown.r-universe.dev", "Date/Publication": "2021-02-12 18:49:29 UTC", "RemoteUrl": "https://github.com/eebrown/covidprobability", "RemoteRef": "HEAD", "RemoteSha": "4d92ce05faf597970c7e46e9f8da135a3f622067", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 11:38:51 UTC", "User": "root" }, "Author": "Eric Brown [aut, cre] (ORCID: ),\nWei Wang [ctb]", "Maintainer": "Eric Brown ", "MD5sum": "7dda1597edc95a4c7a8fb323e29903ef", "_user": "eebrown", "_type": "src", "_file": "covidprobability_0.1.0.tar.gz", "_fileid": "5087ed39509bcba3e2391511a1eec0fa7b79ce0b4488b24d239e39fb960b5194", "_filesize": 700366, "_sha256": "5087ed39509bcba3e2391511a1eec0fa7b79ce0b4488b24d239e39fb960b5194", "_created": "2026-05-29T11:38:51.000Z", "_published": "2026-05-29T12:05:42.739Z", "_distro": "noble", "_jobs": [ { "job": 78493356868, "time": 114, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7289805488" }, { "job": 78493356900, "time": 118, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7289806619" }, { "job": 78493356915, "time": 178, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7290196905" }, { "job": 78493356891, "time": 180, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7290214193" }, { "job": 78492982053, "time": 158, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7289772601" }, { "job": 78493356873, "time": 92, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7289799251" }, { "job": 78493356875, "time": 114, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7289805712" }, { "job": 78493356887, "time": 60, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7289789864" }, { "job": 78493356876, "time": 111, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7289805507" } ], "_buildurl": "https://github.com/r-universe/eebrown/actions/runs/26634994314", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/eebrown/covidprobability", "_commit": { "id": "4d92ce05faf597970c7e46e9f8da135a3f622067", "author": "eebrown ", "committer": "eebrown ", "message": "Initial CRAN release v0.1.0\n", "time": 1613155769 }, "_maintainer": { "name": "Eric Brown", "email": "eb@ericebrown.com", "login": "eebrown", "description": "Psychiatrist, researcher. Author and maintainer of tacmagic and chlorpromazineR @ropensci and CRAN packages.", "uuid": 32402513, "orcid": "0000-0002-1575-2606" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "eebrown", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "eebrown", "count": 20, "uuid": 32402513 } ], "_userbio": { "uuid": 32402513, "type": "user", "name": "Eric Brown", "description": "Psychiatrist, researcher. 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"data.frame" ], "fields": [ "point", "lower", "upper" ], "rows": 21, "table": true, "tojson": true } ], "_help": [ { "page": "adjust_pretest", "title": "Calculate pretest probability change over time", "topics": [ "adjust_pretest" ] }, { "page": "calc_postest_prob", "title": "Calculate posttest probability from pretest probability and test characteristics", "topics": [ "calc_postest_prob" ] }, { "page": "individual_probability", "title": "Calculate a time series of probability for an individual following exposure", "topics": [ "individual_probability" ] }, { "page": "posttest_series", "title": "Calculate post-test probability if testing occurred on each day in a series", "topics": [ "posttest_series" ] }, { "page": "probability_any", "title": "Find the probability of any (at least one) event happening", "topics": [ "probability_any" ] }, { "page": "prop_remaining", "title": "The remaining individuals who would not be expected to show symptoms yet", "topics": [ "prop_remaining" ] }, { "page": "sens", "title": "COVID-19 PCR sensitivity by days since exposure", "topics": [ "sens" ] }, { "page": "unit_probability", "title": "Calculate a time series of unit-wide probability following exposure", "topics": [ "unit_probability" ] } ], "_readme": "https://github.com/eebrown/covidprobability/raw/HEAD/README.md", "_rundeps": [], "_vignettes": [ { "source": "unit-example.Rmd", "filename": "unit-example.html", "title": "Probability of Undetected COVID-19 on a Unit", "engine": "knitr::rmarkdown", "headings": [ "Background", "Presence of COVID-19 on the unit", "Methods", "pretest probability", "Sensitivity", "Posttest Probability", "Unit-wide posttest Probability", "Discussion", "Limitations and Assumptions", "Parameters", "Model assumptions", "Future Directions (and Contributing)", "References" ], "created": "2021-01-21 17:09:17", "modified": "2021-02-12 18:49:29", "commits": 11 } ], "_score": 3.6989700043360187, "_indexed": true, "_nocasepkg": "covidprobability", "_universes": 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